CV
General Information
| Full Name | Nicolas Viart |
| PhD candidate in bioinformatics | |
| viart.nicolas@live.fr | |
| Url | https://nviart.github.io/cv/ |
| Languages | French, English and Spanish |
Experience
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Oct. 2021 - Jul. 2025 PhD in bioinformatics
Institut Curie (Inserm, U900; PSL University), part of the Bioinfo-HUB of Institut Curie - Histopathological and multi-omic characterization of breast tumors developed by germline ATM deleterious variant carriers
- Under the supervision of Fabienne Lesueur, in the "Genetic epidemiology of cancers" team
- Characterisation of methylation patterns of breast cancers developed by ATM variant carriers
- Identification of histological features specific of ATM deficient tumors thanks to deep learning approaches
- Histopathological and multi-omic characterization of breast tumors developed by germline ATM deleterious variant carriers
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Jan. 2021 - Jul. 2021 Internship research in bioinformatics
Institut Curie (Inserm, U900; PSL University) - Epigenetic and transcriptomic characterisation of breast tumors from ATM germline variant carriers
- Development of a pipeline for the analysis of methylation data (Illumina Infinium EPIC & 450K arrays), standard pipeline available at Institut Curie
- Analysis of epigenetic and transcriptomic data of breast tumors
- Epigenetic and transcriptomic characterisation of breast tumors from ATM germline variant carriers
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Feb. 2020 - Jul. 2020 Engineer internship R&D in bioinformatics
Transgene, Strasbourg - Transcriptomic caracterisation of the immune response of tumors infected by a new oncolytic virus
- Implementation of a pipeline to process 3'RNASeq NGS data
- Validation of this method in the company
- caracterisation of the immune response of tumors infected with the new virus
- Transcriptomic caracterisation of the immune response of tumors infected by a new oncolytic virus
Competences
- Data analysis, data vizualisation and data interpretation
- Advance programmation in R (Shiny, Bioconductor packages) and python
- Mastering of the UNIX environment
- Use of versioning systems (git) and pipeline frameworks (Nextflow and SnakeMake)
- Use of public databases (KEGG, GeneOntology, UniProt,...)
- Use of Cytoscape for network vizualisation
Education
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2021 - PRESENT Paris, France
PhD in bioinformatics
Institut Curie (Inserm, U900; PSL University) -
2020 Evry, France
MSc in bioinformatics (2nd year)
Paris-Saclay University -
2017 - 2020 Villejuif, France
MSc (Engineering degree in biotechnology)
SupBiotech - International semester at Essex University (Essex, England)
- BSc in Chemistry-Biology at Paris-Est University (Créteil, France)
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2015 - 2017 Lille, France
1st and 2nd year of BSc in cell biology and physiology
Université des Sciences et Technologies -
2014 - 2015 Châtenay-Malabry
1st year of medicine studies
Paris-Sud XI University